I'm not familiar with the sniper but could it be ignition interference? It's hard to tell from the video, but I assume you'll have an RPM value on the display. Is it fluctuating when you hear the pops? You'd also pick this up with a timing light I would have thought.
Make sure the crank angle sensor (or whatever the sniper uses for timing reference) wiring is well clear of the ignition leads. Spark is generated at 20,000+ volts and will easily induce electrical noise into a low voltage (~5v) signal cable used for timing reference if not correctly routed. I would think the sniper signal cable should also be shielded and earthed.